org.cybertory.MSS
Class GrayscaleTiffs
java.lang.Object
org.cybertory.MSS.ScanSaveType
org.cybertory.MSS.GrayscaleTiffs
- public class GrayscaleTiffs
- extends ScanSaveType
An image file save type that stores one channel per file, with integers
for pixel values.
Method Summary |
void |
createFile(javax.media.jai.RenderedOp image,
java.lang.String fileStem)
Create grayscale tiff image(s) from the working microarray image,
one image file for each channel of the experiment. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
defaultFilenameExtension
public static final java.lang.String defaultFilenameExtension
- See Also:
- Constant Field Values
GrayscaleTiffs
public GrayscaleTiffs(CommonScanSaveParams commonParams,
int numBits)
GrayscaleTiffs
public GrayscaleTiffs(CommonScanSaveParams commonParams)
createFile
public void createFile(javax.media.jai.RenderedOp image,
java.lang.String fileStem)
- Create grayscale tiff image(s) from the working microarray image,
one image file for each channel of the experiment.
Before calling this method, the image has already had noise, blur,
and gain taken into effect. The input image has a sample datatype
of float, with saturation = 1.0.
- Specified by:
createFile
in class ScanSaveType
- Parameters:
image
- A rendered image containing all the channels.fileStem
- The stem of the filename; "_1", "_2", ... will be added
for the channels.